Recent work suggests that large language models (LLMs) can perform multi-hop reasoning implicitly -- producing correct answers without explicitly verbalizing intermediate steps -- but the underlying mechanisms remain poorly understood. In this paper, we study how such implicit reasoning emerges by training transformers from scratch in a controlled symbolic environment. Our analysis reveals a three-stage developmental trajectory: early memorization, followed by in-distribution generalization, and eventually cross-distribution generalization. We find that training with atomic triples is not necessary but accelerates learning, and that second-hop generalization relies on query-level exposure to specific compositional structures. To interpret these behaviors, we introduce two diagnostic tools: cross-query semantic patching, which identifies semantically reusable intermediate representations, and a cosine-based representational lens, which reveals that successful reasoning correlates with the cosine-base clustering in hidden space. This clustering phenomenon in turn provides a coherent explanation for the behavioral dynamics observed across training, linking representational structure to reasoning capability. These findings provide new insights into the interpretability of implicit multi-hop reasoning in LLMs, helping to clarify how complex reasoning processes unfold internally and offering pathways to enhance the transparency of such models.

Multi-hop Knowledge Base Question Answering(KBQA) aims to find the answer entity in a knowledge base which is several hops from the topic entity mentioned in the question. Existing Retrieval-based approaches first generate instructions from the question and then use them to guide the multi-hop reasoning on the knowledge graph. As the instructions are fixed during the whole reasoning procedure and the knowledge graph is not considered in instruction generation, the model cannot revise its mistake once it predicts an intermediate entity incorrectly. To handle this, we propose KBIGER(Knowledge Base Iterative Instruction GEnerating and Reasoning), a novel and efficient approach to generate the instructions dynamically with the help of reasoning graph. Instead of generating all the instructions before reasoning, we take the (k 1)-th reasoning graph into consideration to build the k-th instruction. In this way, the model could check the prediction from the graph and generate new instructions to revise the incorrect prediction of intermediate entities. We do experiments on two multi-hop KBQA benchmarks and outperform the existing approaches, becoming the new-state-of-the-art. Further experiments show our method does detect the incorrect prediction of intermediate entities and has the ability to revise such errors.